Tutorial

Here we present a tutorial on how to use CIMA to analyze chromatin structure from super-resolution microscopy data.

The tutorial is based on the dataset published in [CIMA paper ref. :D]. The data shown comes mainly from the chromosome 3 dataset.

It is organized in the following sections:

• 1 - Guided identification of chromatin segments
• 2 - Experimental quality assessment
• 3 - 3D Reconstruction Assessment
• 4 - Distance extraction
• 5 - Comparison with orthogonal methods
• 6 - Morphological features extraction
• 99 - Writting to and reading from different formats