Welcome to CIMA’s documentation

Chromatin Imaging Analysis (CIMA) is a Python package designed to facilitate the automated detection, assessment, and analysis of complex chromatin tracing experiments.

Authors: Ivan Piacere, Iago Meceda Porto, Anthony Palmieri, Mattia Roccatello, Irene Farabella

Contents:

• How to install CIMA
  • Install CIMA from the public gitlab
• CIMA Tutorials
  • 1 - Guided identification of chromatin segments
  • 2 - Experimental quality assessment
  • 3 - 3D Reconstruction Assessment
  • 4 - Distance extraction
  • 5 - Comparison with orthogonal methods
  • 6 - Morphological features extraction
  • 99 - Writting to and reading from different formats
• CIMA Python API