Tutorial
========

Here we present a tutorial on how to use CIMA to analyze chromatin structure from super-resolution microscopy data.

The tutorial is based on the dataset published in [CIMA paper ref. :D]. The data shown comes mainly from the chromosome 3 dataset.

It is organized in the following sections:

.. toctree::
    :maxdepth: 1

    1_Guided_identification_of_chromatin_segments_simplecase
    2_Experimental_quality_assessment
    3_3D_Reconstruction_Assessment
    4_Distance_extraction
    5_Comparison_with_orthogonal_methods
    6_Morphological_features_extraction
    99_Writting_and_reading_to_different_formats